Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs79496913 chr17:39553833 G/A 0.000125 110 13.15 19.23 0 KM Plot
LAML rs79577746 chr6:160416770 G/A 2.31E-5 109 12.18 39.05 0 KM Plot
LAML rs79618460 chr2:238419959 T/C 0.000123 110 13.1 15.7 0 KM Plot
LAML rs79658099 chr1:95417389 T/C 8.62E-5 111 13.1 22.37 0 KM Plot
LAML rs79693929 chr13:114623263 C/T 4.7E-7 111 13.1 19.82 0.5 KM Plot
LAML rs7971677 chr12:125411863 C/T 7.55E-5 111 5.6 21.37 16.27 KM Plot
LAML rs79774506 chr7:135640778 C/T 9.82E-5 111 13.2 28.47 0 KM Plot
LAML rs79775351 chr2:62578333 C/T 9.28E-5 107 15.7 10.63 0 KM Plot
LAML rs79954596 chr19:19548643 T/G 9.93E-5 111 16.3 9.1 0 KM Plot
LAML rs79994455 chr2:3225246 T/C 6.4E-5 110 0 14.7 15.23 KM Plot
LAML rs80009529 chr16:71719013 G/A 0.000157 111 15.2 14.67 0 KM Plot
LAML rs8005973 chr14:90774951 C/T 2.75E-6 110 13.2 21.37 1.03 KM Plot
LAML rs80098624 chr7:135609625 T/A 8.34E-5 110 13.1 27.93 0 KM Plot
LAML rs80118674 chr1:95381423 G/A 9.52E-5 110 13.1 22.83 0 KM Plot
LAML rs80136370 chr7:135651815 T/C 7.36E-5 111 13.15 28.93 0 KM Plot